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What is SARS-CoV RNA SSS DATABASE?
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SARS-CoV RNA SSS DATABASE is a database of the predicted RNA secondary structural
sequences of six SARS coronaviruse complete genomes which were sequenced and submitted
to GenBank by the separate sequencing and research groups from countries and areas,
including Beijing, Hong Kong, Taiwan, USA, Canada, and Germany.
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The database provides the detailed information of all the possible hairpin loops, interior loops,
bulge loops, multi-branched loops, double-stranded stems, and free unpaired nucleotides of RNA
secondary structural sequences of six SARS isolates, BJ01(Accession: AY278488), CUHK-AG01
(Accession: AY345986), TWY (Accession: AP006561), Urbani (Accession: AY278741), TOR2
(Accession: AY274119), and Frankurt 1 (Accession: AY291315) , and it is freely accessible
at http://www.liuweibo.com/sarsdb/ .
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The ORIGIN sequences in the database are from the NCBI's GenBank.
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All the RNA secondary structures in the database were predicted using the software RNAstructure V4.2,
freely provided by David H. Mathews, Michael Zuker, and Douglas H. Turner.
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The database was created and maintained by SARS-CoV RNA SSS DATABASE research group
at School of Life Sciences, Yunnan University, Kunming, China.
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