SARS-CoV RNA SSS DATABASE

To search for the detailed information of the predicted RNA secondary structural

sequences(SSS) of six SARS coronaviruses, click the following CDS links.

Beijing	Hong Kong	Taiwan	USA	Canada	Germany
BJ01 29725 bp CDS	CUHK-AG01 29736 bp CDS	TWY 29727 bp CDS	Urbani 29727 bp CDS	TOR2 29751 bp CDS	Frankfurt 1 29727 bp CDS
5'UTR & pp1a 246..13379 Part 1; Part 2	5'UTR & pp1a 250..13383 Part 1; Part 2	5'UTR & pp1a 265..13398 Part 1; Part 2	5'UTR & pp1a 265..13398 Part 1; Part 2	5'UTR & pp1a 265..13392 Part 1; Part 2	5'UTR & pp1a 265..13398 Part 1; Part 2
pp1b 13379..21466 Part 1; Part 2	pp1b 13383..21470 Part 1; Part 2	pp1b 13398..21485 Part 1; Part 2	pp1b 13398..21485 Part 1; Part 2	pp1b 13392..21485 Part 1; Part 2	pp1b 13398..21485 Part 1; Part 2
S protein 21473..25240	S protein 21477..25244	S protein 21492..25259	S protein 21492..25259	S protein 21492..25259	S protein 21492..25259
PUP1 25249..26073	PUP1 25253..26077	PUP1 25268..26092	PUP1 25268..26092	PUP1 25268..26092	PUP1 25268..26092
PUP2 25670..26134	PUP2 25674..26138	PUP2 25689..26153	PUP2 25689..26153	PUP2 25689..26153	PUP2 25689..26153
E protein 26098..26328	E protein 26102..26332	E protein 26117..26347	E protein 26117..26347	E protein 26117..26347	E protein 26117..26347
M protein 26379..27044	M protein 26383..27048	M protein 26398..27063	M protein 26398..27063	M protein 26398..27063	M protein 26398..27063
PUP3 27055..27246	PUP3 27059..27250	PUP3 27074..27265	PUP3 27074..27265	PUP3 27074..27265	PUP3 27074..27265
PUP4 27254..27622	PUP4 27258..27626	PUP4 27273..27641	PUP4 27273..27641	PUP4 27273..27641	PUP4 27273..27641
PUP5 28111..28407	PUP5 28115..28411	PUP5 27638..27772	PUP5 27864..28118	PUP5 27638..27772	PUP5 27638..27772
N protein 28101..29369	N protein 28105..29373	PUP6 27779..27898	N protein 28120..29388	PUP6 27779..27898	PUP6 27779..27898
3'UTR Others	3'UTR Others	PUP7 27846..28118	3'UTR Others	PUP7 27864..28118	PUP7 27864..28118
		PUP8 28130..28426		PUP8 28130..28426	PUP8 28130..28426
		N protein 28120..29388		PUP9 28583..28795	N protein 28120..29388
		3'UTR Others		N protein 28120..29388	3'UTR Others
				3'UTR Others

Note: For pp1a and pp1b have very long sequences, their secondary structural sequence (SSS)

webpage files are divided into TWO parts, Part 1 and Part 2.

ABBREVIATIONS:

	bp	base pair
	CDS	coding sequence
	pp1a	nonstructural polyprotein 1a
	pp1b	nonstructural polyprotein 1b
	S	surface spike glycoprotein S
	E	envelop protein E
	M	membrane glycoprotein M
	N	nucleocapsid protein N
	PUP	putative uncharaterized protein